Recent Publications
PubMed Listing for Michael Nachman
Nachman, M.W. and B.A. Payseur, 2012. Recombination rate variation and speciation: theoretical predictions and empirical results from rabbits and mice. Philosophical Transactions of the Royal Society B 367: 409-421. 
Geraldes, A., P. Basset, K.L. Smith, and M.W. Nachman, 2011. Higher differentiation among subspecies of the house mouse (Mus musculus) in genomic regions with low recombination. Molecular Ecology 20(22): 4722-4736.
Song, Y., S. Endepols, N. Klemann, D. Richter, F.-R. Matuschka, C.-H. Shih, M.W. Nachman, and M.H. Kohn, 2011. Adaptive introgression of anticoagulant rodent poison resistance by hybridization between Old World mice. Current Biology 21: 1296-1301.
Dean, M.D., G.D. Findlay, M.R. Hoopmann, C.C. Wu, M.J. MacCoss, W.J. Swanson, and M.W. Nachman, 2011. Identification of ejaculated proteins in the house mouse (Mus domesticus) via isotopic labeling. BMC Genomics 12: 306.
Yang, H., J.R. Wang, J.P. Didion, R.J. Buus, T.A. Bell, C.E. Welsh, F. Bonhomme, H.T. Yu, M.W. Nachman, J. Pialek, P.K. Tucker, P. Boursot, L. McMillan, G.A.
Churchill, and F. Pardo-Manuel de Villena, 2011. Subspecific origin and haplotype diversity in the laboratory mouse. Nature Genetics 43: 648-655.
Wang, L., K. Luzynski, J. Pool, V. Janoušek, P. Dufková, M. Vyskocilová, K.C.
Teeter, M.W. Nachman, P. Munclinger, M. Macholán, J. Piálek, and P.K. Tucker, 2011. Measures of linkage disequilibrium among neighboring SNPs indicate asymmetries across the house mouse hybrid zone. Molecular Ecology 20: 2985-3000.
Reifova, R., J. Reif, M. Antczak, and M.W. Nachman, 2011. Ecological character
displacement in the face of gene flow: evidence from two species of nightingales. BMC Evolutionary Biology 11: 138.
Carneiro, M., S. Afonso, A. Geraldes, H. Garreau, G. Bolet, S. Boucher, A. Tircazes, G. Queney, M.W. Nachman, and N. Ferrand, 2011. The genetic structure of domestic rabbits. Molecular Biology and Evolution 28(6): 1801-1816.
Good, J.M., D. Vanderpool, K.L. Smith, and M.W. Nachman, 2011. Extraordinary sequence divergence at Tsga8, an X-linked gene involved in mouse spermiogensis. Molecular Biology and Evolution 28(5): 1675-1686.
Good, J.M., T. Giger, M.D. Dean, and M.W. Nachman, 2010. Widespread over-expression of the X chromosome in sterile F1 hybrid mice. PLoS Genetics 6(9): e1001148.
Carneiro, M., J.A. Blanco-Aguiar, R. Villafuerte, N. Ferrand, M.W. Nachman, 2010. Speciation in the European rabbit (Oryctolagus cuniculus): Islands of differentiation on the X-chromosome and autosomes. Evolution 64(12): 3443-3460.
Geraldes, A., T. Rambo, R. Wing, N. Ferrand, and M.W. Nachman, 2010. Extensive gene conversion drives the concerted evolution of paralogous copies of the SRY gene in European rabbits. Molecular Biology and Evolution 27(11): 2437-2440.
Wlasiuk, G., and M.W. Nachman, 2010. Adaptation and contraint at toll-like receptors in primates. Molecular Biology and Evolution 27(9): 2172-2186.
Wlasiuk, G., and M.W. Nachman, 2010. Promiscuity and the rate of molecular evolution at primate immunity genes. Evolution 64(8): 2204-2220.
Teeter, K.C., L.M. Thibodeau, Z. Gompert, C.A. Buerkle, M.W. Nachman, and P.K. Tucker, 2010. The variable genomic architecture of isolation between hybridizing species of house mice. Evolution, 64(2): 472-485.
Storchova, R., J. Reif, and M.W. Nachman, 2010. Female heterogamety and
speciation: Reduced introgression of the Z chromosome between two
species of nightingales. Evolution, 64(2): 456-471.
Dean, M.D., N.L. Clark, G.D. Findlay, R.C. Karn,
X. Yi, W.J. Swanson, M.J. MacCoss, and M.W. Nachman, 2009. Proteomics
and comparative genomic investigations reveal heterogeneity in evolutionary
rate of male reproductive proteins in mice (Mus domesticus). Molecular Biology
and Evolution, 26(8): 1733-1743.
Wlasiuk, G., S. Khan, W.M. Switzer, and M.W. Nachman, 2009. A history
of recurrent positive selection at the Toll-like receptor 5 in primates. Molecular
Biology and Evolution, 26(4): 937-949.
Carneiro, M., N. Ferrand, and M.W. Nachman, 2009. Recombination
and speciation: Loci near centromeres are more differentiated than
loci near telomeres between subspecies of the European rabbit (Oryctolagus
cuniculus). Genetics, 181: 593-606.
Dean, M.D., and M.W. Nachman,
2009. Faster fertilization rate in conspecific
versus heterospecific matings in house mice. Evolution 63: 20-28.
Geraldes, A., M. Carneiro, M. Delibes-Mateos, R. Villafuerte, M.W.
Nachman, and N. Ferrand, 2008. Reduced introgression
of the Y chromosome between subspecies of the European rabbit (Oryctolagus
cuniculus) in the Iberian Peninsula. Molecular Ecology 17: 4489-4499.
Geraldes, A., P. Basset, B. Gibson, K. Smith,
B. Harr, H.T. Yu, N. Bulatova, Y. Ziv, and M.W. Nachman, 2008.
Inferring the history of speciation in house mice from autosomal,
X-linked, Y-linked and mitochondrial genes. Molecular Ecology 17:
5349-5363.
Good, J.M., M.D. Dean, and
M.W. Nachman, 2008. A complex genetic basis to X-linked hybrid
male sterility between two species of house mice. Genetics 179: 2213-2228.
Good, J.M., M.A. Handel, and M.W. Nachman,
2008. Asymmetry and polymorphism of hybrid male sterility during
the early stages of speciation in house mice. Evolution 62(1): 50-65.
Dean, M.D., J.M. Good, and M.W. Nachman,
2008. Adaptive
evolution of proteins secreted during sperm maturation: an
analysis of the mouse epididymal transcriptome. Molecular Biology
and Evolution 25(2): 383-392.
Teeter,
K.C., B.A. Payseur, L.W. Harris, M.A. Bakewell, L.M. Thibodeau, J.E.
O´Brien,
J.G. Krenz, M.A. Sans-Fuentes, M.W. Nachman, and P.K. Tucker, 2008.
Genome-wide patterns of gene flow across a house mouse hybrid zone.
Genome Research 18: 67-76.
Salcedo, T., A. Geraldes, and M.W. Nachman, 2007.
Nucleotide variation in wild and inbred mice. Genetics 177: 2277-2291.
Wlasiuk,
G. and M.W. Nachman, 2007. The genetics of adaptive coat color
in gophers: Coding variation at Mc1r is not responsible for
dorsal color differences. Journal of Heredity 98(6): 567-574.
Laurie, C.C, D.A. Nickerson, A.D. Anderson,
B.S. Weir, R.J. Livingston, M.D. Dean, K.L. Smith, E.E. Schadt,
and M.W. Nachman,
2007. Linkage
disequilibrium in wild mice. PLoS Genetics 3(8): e144.
Storz, J.F., S.J. Sabatino, F.G. Hoffmann, E.J. Gering, H. Moriyama, N.
Ferrand, B. Monteiro, and M.W. Nachman, 2007. The molecular basis
of high-altitude adaptation in deer mice. PLoS Genetics 3(3): 0448-0459.
Saunders, M.A., J.M. Good, E.C. Lawrence, R.E. Ferrell, W-H. Li, and M.W.
Nachman, 2006. Human Adaptive Evolution at Myostatin (GDF8), a
Regulator of Muscle Growth. American Journal of Human Genetics 79:
1089-1097.
Dean, M.D., K.G. Ardlie, and M.W. Nachman, 2006. The
frequency of multiple paternity suggests that sperm competition is
common in house mice Mus domesticus. Molecular Ecology 15:
4141-4151.
Geraldes, A., N. Ferrand, and M.W. Nachman, 2006. Contrasting patterns
of introgression at X-linked loci across the hybrid zone between
subspecies of the European rabbit (Oryctolagus cuniculus). Genetics 173:
919-933.
Nachman, M.W., 2006. Detecting selection at the molecular level. In: Evolutionary
Genetics, Concepts and Case Studies, edited by C.W. Fox and J.B.
Wolf. Oxford University Press, Oxford.
Wood, E.T., D.A. Stover, M. Slatkin, M.W. Nachman, and M.F. Hammer, 2005.
The beta-globin recombinational hotspot reduces the effects of genetic
hitchhiking around HbC, a recently arisen mutation providing resistance
to malaria. American Journal of Human Genetics 77: 637-642.
Saunders, M.A., M. Slatkin, C. Garner, M.F. Hammer, and M.W. Nachman,
2005. The extent of linkage disequilibrium caused by selection on
G6PD in humans. Genetics 171: 1219-1229.
Hoekstra, H.E., and M.W. Nachman, 2005. Coat color variation in rock pocket
mice (Chaetodipus intermedius): from genotype to phenotype, pp.
79-99 in Mammalian Diversification: From Chromosomes to Phylogeography,
E. Lacey and P. Myers, Eds. University of California Publications in
Zoology.
Good,
J. M. and Nachman, M. W. 2005. Rates of protein evolution are positively
correlated with timing of expression during mouse spermatogenesis.
Molecular Biology and Evolution 22:1044-1052.
Payseur,
B.A., and M.W. Nachman, 2005. The genomics of speciation:
investigating the molecular correlates of X chromosome introgression
across the hybrid zone between Mus domesticus and Mus
musculus.
Biol. J. Linn. Soc 84: 523-534.
Nachman,
M.W. 2005. The genetic basis of adaptation: lessons from concealing
coloration in pocket mice. Genetica 123:125-136.
Hoekstra,
H.E., J.G. Krenz, and M.W. Nachman, 2005. Local adaptation
in the rock pocket mouse (Chaetodipus intermedius): natural
selection and phylogenetic history of populations. Heredity
94: 217-228.
Nachman,
M.W., 2004. Haldane and the first estimates of the human mutation
rate. J. Genet. 83: 231-233.
Payseur,
B.A., J.G. Krenz, and M.W. Nachman, 2004. Differential patterns
of introgression across the X chromosome in a hybrid zone between
two species of house mice. Evolution 58: 2064-2078. (Erratum)
Hammer,
M.F., D. Garrigan, E. Wood, J.A. Wilder, Z. Mobasher, A. Bigham, J.G.
Krenz, and M.W. Nachman, 2004. Heterogeneous patterns of variation
among multiple X linked loci: the possible role of diversity reducing
selection in non-Africans. Genetics 167: 1841-1853.
Rosenblum,
E.B., H.E. Hoekstra, and M.W. Nachman, 2004. Adaptive reptile color
variation and the evolution of the Mc1r gene. Evolution 58:
1794-1808.
Storz,
J.F., B.A. Payseur, and M.W. Nachman, 2004. Genome scans of microsatellite
variability in humans reveal evidence for selective sweeps outside
of Africa. Mol. Biol. Evol. 21: 1800-1811.
Hoekstra,
H.E., K.E. Drumm, and M.W. Nachman, 2004. Ecological genetics
of adaptive color polymorphism in pocket mice: geographic variation
in selected and neutral genes. Evolution 58: 1329-1341.
Nachman,
M.W., S.L. D'Agostino, C.R. Tillquist, Z. Mobasher, and M.F. Hammer,
2004. Nucleotide variation at Msn and Alas2, two
genes flanking the centromere of the X chromosome in humans. Genetics
167: 423-437.
Storz,
J.F. and M.W. Nachman, 2003. Natural selection on protein polymorphism
in the rodent genus Peromyscus: evidence from interlocus contrasts.
Evolution 57: 2628-2635.
Hammer,
M.F., F. Blackmer, D. Garrigan, M.W. Nachman, and J.A. Wilder.
2003. Human population structure and its effects on sampling Y
chromosme sequence variation. Genetics 164: 1495-1509.
Nachman,
M.W., Hoekstra, H.E., and S.L. D'Agostino, 2003. The genetic basis
of adaptive melanism in pocket mice. Proc. Nat. Acad. Sci. USA
100: 5268-5273.
Hoekstra, H.E., and M.W. Nachman, 2003. Different
genes underlie adaptive melanism in different populations of
rock pocket mice. Mol. Ecol. 12: 1185-1194.
Saunders,
M.A., M.F. Hammer, and M.W. Nachman, 2002. Nucleotide variability
at G6pd and the signature
of malarial selection in humans. Genetics 162:1849-1861.
Nachman,
M.W. 2002 Variation in recombination rate across the genome: evidence
and implications. Curr. Op. Genet. Devel. 12: 657-663.
Payseur,
B.A., and M.W. Nachman, 2002. Natural selection at linked sites
in humans. Gene 300: 31-42.
Payseur,
B.A., A.D. Cutter, and M.W. Nachman, 2002. Searching for evidence
of positive selection in the human genome using patterns of microsatellite
variability. Mol. Bio. Evol. 19: 1143-1153.
Payseur,
B.A., and M.W. Nachman, 2002. Gene density and human nucleotide
polymorphism. Mol. Biol. Evol. 19: 336-340.
Nachman,
M.W. 2001. Single nucleotide polymorphisms and recombination rate in
humans. Trends in Genetics 17: 481-485.
Riginos, C., and M.W. Nachman, 2001. Population
subdivision in marine environments: the contributions of isolation
by distance, discontinuous habitat, and biogeography to genetic differentiation
in a blennioid
fish, Axoclinus nigricaudus. Molecular Ecology 10: 1439-1453.
Payseur,
B.A., and M.W. Nachman, 2000. Microsatellite variation and recombination
rate in the human genome. Genetics 156: 1285-1298.
Gilad,
Y., D. Segre, K. Skorecki, M.W. Nachman, D. Lancet, and D. Sharon,
2000. Dichotomy of single-nucleotide polymorphism haplotypes in
olfactory receptor genes and pseudogenes. Nature Genetics 26: 221-224.
Nachman,
M.W., and S.L. Crowell, 2000. Estimate of the mutation rate per
nucleotide in humans. Genetics 156: 297-304. Romanian translation
Nachman,
M.W., and S.L. Crowell, 2000. Contrasting evolutionary histories
of two introns of the Duchenne muscular dystrophy locus, Dmd,
in humans. Genetics 155: 1855-1864.